National Institute of Allergy and Infectious Diseases



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Pathogen Functional Genomics Resource Center
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Pathogen Functional Genomics Resource Center (PFGRC)

Bioinformatics Tools

(All links below are to non-Government web sites.)

The PFGRC makes its resources, technology platforms, and scientific and technical expertise available for studies for the purpose of developing bioinformatics tools of broad interest and value to the scientific community.

Open source software packages

APEX-QPT: A quantitative proteomics tool
EASE: Resources for biological role analysis of gene lists
F. Tularensis comparative analysis tool
Ginkgo: A CGH and expression microarray statistical analysis and normalization platform
Magnolia: A microarray data management and export system for PFGRC microarrays
Microarray Annotation Pipeline: Annotation files for PFGRC microarrays
S. pneumoniae comparative analysis tool
TM4: A comprehensive microarray software suite for data management and analysis

LEM (Linear Expression Maps): A tool for visualizing gene expression on a chromosomal coordinate map. Implemented in the MeV Application
NonpaR: Four nonparametric statistical test for common microarray experimental designs. Implemented in the MeV Application