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Bioinformatics Summit 2006
Meeting Agenda
February 16, 2006 |
| 8:00 – 8:30 a.m. |
Sign-in/Refreshments |
| 8:30 – 8:40 a.m. |
Welcome and Opening Remarks
Daniel Rotrosen, M.D., Director, Division of Allergy, Immunology, and Transplantation, NIAID |
| 8:40 – 9:10 a.m. |
An Overview of Bioinformatics Challenges in Supporting Clinical and Basic Immunological Research
Cheryl Kraft, M.S., Associate Director, Office of Biomedical Informatics, Division of Allergy, Immunology, and Transplantation (DAIT), NIAID |
Session I Bioinformatics in DAIT-Funded Programs |
| 9:10 – 9:40 a.m. |
The National Center for Biomedical Ontology: Online Knowledge Resources for Basic Biology, Clinical Care, and Clinical Research
Immune Tolerance Network (ITN)
Mark Musen, M.D., Ph.D., Head, Stanford Medical Informatics, Stanford University |
| 9:40 – 10:10 a.m. |
ITN Clinical Studies (PDF 149K)
Tiepu Liu, M.D., Ph.D. Director, Biostatistics
CCTPT and CTOT Solid Organ Transplant Networks - Clinical and Mechanistic Studies (PDF 315K)
David N. Ikle, Ph.D., Director, Biostatistics (CCTPT, CTOT) |
| 10:10 – 10:40 a.m. |
Status and Plans for the Immune Epitope Database and Analysis Resource (PDF 2.5MB)
Immune Epitope Database (IEDB)
Steve Wilson, Ph.D., Project Director
Bjoern Peters, Ph.D. |
| 10:40 – 10:50 a.m. |
BREAK |
| 10:50 – 11:20 a.m. |
An Overview of the Purpose, Design, and Data Types for the NIAID's Inner City Asthma Consortium
Mitchell slides (PDF 411K) | Wallace slides (PDF 168K)
Herman Mitchell, Ph.D. PI of Inner City Asthma Consortium, Statistical and Clinical Coordinating Center (Rho)
Dennis Wallace, Ph.D. Senior statistical scientist (ADVN, Inner City Asthma, Rho) |
| 11:20 – 11:50 p.m. |
Bioinformatic Challenges for Gene and Protein Expression Profiling in Clinical Transplantation Genomics of Transplantation Program (PDF 155K)
Daniel Salomon, M.D., Scripps |
| 11:50 – 1:00 p.m. |
LUNCH (on your own) |
| 1:00 – 1:30 p.m. |
Experimental Data Modeling and Analytical Pipelines in the ImmPort System (PDF 629K)
Experimental Data Conceptual Model (PDF 102K)
Experimental Data Model (Microsoft Excel 25K)
Bioinformatics Integration Support Contract (BISC)
Richard H. Scheuermann, Ph.D./David Karp M.D. (UT Southwestern Medical Center) |
| 1:30 – 2:00 p.m. |
Clinical Data Capture and Exchange (Emmes) (PDF 385K)
Donald Stablein, Ph.D. |
| 2:00 – 2:20 p.m. |
BREAK |
Session II Bioinformatics in Other Programs and Activities |
| 2:20 – 2:50 p.m. |
Genetic Association Database: the Genetics of Common Disease (NIA, CIT) (PDF 1.3MB)
Kevin G. Becker, Ph.D, DNA Array Unit, NIA |
| 2:50 – 3:20 p.m. |
Semantic Web (W3C.org; click on the screen to move slides forward)
Eric Miller, W3C.org |
| 3:20 – 3:50 p.m. |
The Biomedical Informatics Research Network: A National Information Infrastructure to Enable and Advance Biomedical Research (BIRN) (PDF 6MB)
Jeffrey S. Grethe, Ph.D.
Biomedical Informatics Research Network
University of California, San Diego |
| 3:50 – 4:20 p.m. |
Biomedical Informatics in Large-Scale Complex Disease Gene Mapping Studies (Type I Diabetes Genetics Consortium) (PDF 1.2MB)
Josyf Mychaleckyj, M.A., D.Phil.
Center for Human Genomics
Wake Forest University School of Medicine |
| 4:20 – 4:50 p.m. |
Interoperability and the Cancer Biomedical Informatics Grid (CaBIG) (PDF 648K)
Peter Covitz, NCICB Director Core Infrastructure (NCI) |
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ADJOURN |
February 17, 2006 |
| 8:30 – 9:00 a.m. |
Refreshments |
Session III Group Discussion: Gaps and Suggested Solutions in Bioinformatics to Support Immunological Research |
| 9:00 – 9:15 a.m. |
Guideline for Group Discussion
Cheryl Kraft |
| 9:15 – 11:00 a.m. |
Breakout Working Groups (Group I & II) |
| 11:00 – 12:00 a.m. |
Presentation from Each Working Group and Discussion |
| 12:00 – 12:30 p.m. |
Action Items and Meeting Summary
Cheryl Kraft |
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