Influenza Genome Sequencing Project

Viral Samples Sequenced and Being Sequenced

Collaborator	Affiliation	Brief Description of Samples	Number of Samples	Status (Non-government link)
Simon Agwale	Innovative Biotech, Keffi Nasarawa State, Nigeria	Avian influenza viruses (H5N1) from Nigeria collected in 2006	120	In Progress
Jack Bennink Jonathan Yewdell Jill Taylor Kirsten St. George	NIAID Division of Intramural Research Wadsworth Center, New York State Department of Health	H3N2 and H1N1 viruses from human clinical isolates collected globally between 1931-1968	60	In Progress
Florence Bourgeois	Children's Hospital of Boston/Beth Israel Deaconess Medical Center	Human influenza A isolates collected between 2007-2008	120	In Progress
		Human influenza A isolates collected between 2003-2007	240	In Progress
David Boyle	CSIRO Livestock Industries/Australian Animal Health Laboratory	Avian influenza viruses from Australian poultry from 1976 (H7N7), 1985 (H7N7), 1992 (H7N3), 1994 (H7N3), and 1997 (H7N4); Avian influenza strains from wild birds and ducks between 1978-2007	200	In Progress
Earl Brown	University of Ottawa, Canada	Mouse adapted variants of human (H1N1, H2N2, and H3N2) and swine influenza viruses	93	In Progress
Doris Bucher	New York Medical College	Human influenza A reassortment viruses H3N2 between 2003-2007	88	In Progress
Ilaria Capua	OIE/FAO International Reference Laboratory	Avian influenza viruses (H5N1) from Africa, Asia, and Middle East and from avian influenza viruses (H7N1 and H7N3) from Italy between 1999-2004	603	In Progress
Carol Cardona	University of California, Davis	Avian influenza viruses (H5N1) from Pacific flyway, including California, in free-flying and domestic ducks between 2005-2006	13	In Progress
Robert Couch	Baylor College of Medicine	Human influenza B viruses collected between 1997-2005	50	In Progress
Laurel Edelman	Surveillance Data, Inc. (SDI)	Human influenza viruses collected between 2006-2007 in the U.S.	603	In Progress
Christine Ginocchio	Long Island Jewish Health System	H3N2 and H1N1 viruses from human clinical isolates, collected in New York between 2000-2005	100	In Progress
Kim Halpin	OIE Reference Laboratory/Australian Animal Health Laboratory	Avian influenza viruses (H5N1) collected in Indonesia, Vietnam, Malaysia, Cambodia, Myanmar, and Laos between 2004-2007	200	In Progress
Eva Harris	University of California, Berkeley	Respiratory sample collection on children in Nicaragua began in 2007. Samples are tested for influenza A and B.	120	In Progress
		Respiratory samples collected on children in Nicaragua between 2006-2007	414	In Progress
Hon Ip	USGS/DOI National Wildlife Health Center	Avian influenza viruses obtained from wild bird surveillance collection, including a variety of subtypes, collected between 1983-2006 from migratory birds in Pacific flyway	100	In Progress
Lance Jennings Catherine Macken Kitty Croxson Sue Huang	Canterbury Health Laboratories Los Alamos National Laboratories Aplus, Auckland, NZ ESR, Porirua, NZ	Viruses from human clinical isolates, collected in New Zealand between 2000-2005	700	In Progress
		H3N2 viruses (2000-2005)	600
		H1N1 viruses (2000-2001)	100
Frederick Leighton	Canadian Cooperative Wildlife Health Centre, University of Saskatchewan	Avian influenza viruses from wild birds, collected between 2005-2006 from Canada, including the northeast coast	200	In Progress
Emanuele Montomoli	University of Siena	H3N2, H1N1, and influenza B viruses from human clinical isolates collected between 1986-2006 in Italy	45	In Progress
Peter Palese	Department of Microbiology, Mount Sinai School of Medicine	H1N1 viruses from human clinical isolates, collected between 1942-1957	8	Completed
Michael Shaw Alexander Klimov Xiyan Xu Nancy Cox	Centers for Disease Control and Prevention (CDC)	Human influenza B viruses, collected globally between 1987-2006	100	Completed
Shin-Ru Shih	Chang Gung Memorial Hospital, Taiwan	H3N2 and H1N1 viruses from human clinical isolates collected in Taiwan between 1996-2006	100	In Progress
Richard Slemmons Jeffrey Taubenberger	Ohio State University Armed Forces Institute of Pathology	Isolates from influenza A virus repository at Animal Influenza Virus Service Laboratory collected in Ohio and Maryland from 10 species of wild, free-ranging ducks between 1986-2004	300	In Progress
Guadalupe Ayora Talavera	Centro de Investigaciones Regionales	Human influenza viruses from Mexico, collected between 1999-2004	100	In Progress
Jill Taylor Kirsten St. George	Wadsworth Center, New York State Department of Health	H3N1, H1N1, and H1N2 viruses from human clinical isolates, collected in Australia each year between 1997-2005	400	In Progress
Jill Taylor Kirsten St. George	Wadsworth Center, New York State Department of Health	H3N2, H1N1, and H1N2 viruses from human clinical isolates, collected in New York each year between 1998-2005	399	In Progress
		H3N2 viruses (2004- 2005)	68
		H3N2 viruses (2003- 2004)	75
		H3N2 viruses (2002- 2003)	16
		H1N1 viruses (2002- 2003)	13
		H1N2 viruses (2002-2003)	17
		H3N2 viruses (2001-2002)	65
		H1N2 viruses (2001-2002)	1
		H1N1 viruses (2000-2001)	26
		H3N2 viruses (1999-2000)	52
		H1N1 viruses (1999-2000)	1
		H3N2 viruses (1998-1999)	65
Jill Taylor Kirsten St. George	Wadsworth Center, New York State Department of Health	H3N2 and H1N1 viruses from human clinical isolates, collected in New York between 1992-1998	300	In Progress
		H3N2, H2N2 and H1N1 viruses from human clinical isolates, collected in New York between 1948-1979	45
Robert Webster Scott Krauss   Eric Hoffmann Clayton Naeve	St. Jude Children's Research Hospital   Hartwell Center for Biotechnology	Total Isolates	473	In Progress
		Human Clinical Isolates
		H1N1 viruses (1933-2003)	151
		H2N2 viruses (1957-1980)	15
		H3N1 viruses	100
		Equine Viruses
		H3N8 viruses (1963-2002)	93
		H7N7 viruses (1958-1977)	11
		Swine Viruses
		H1N1 viruses (1931-1997)	100
		H3N2 viruses (1977, 1978, 1980)	3