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Microbial Genome Sequencing Centers

Review and Selection Process

Sequencing projects will be selected by NIAID based on NIAID programmatic priorities, national priorities, cost considerations, available funds, sequencing capacities of the two centers, availability of source of DNA, and input from the Microbial Sequencing Center (MSC) Working Group. Levels of priority (high, medium, and low) for the sequencing project will be determined; the process will not involve the NIH peer review system.

It is anticipated that the review process will be completed within four to six weeks of the proposal receipt deadline. NIAID may revise this timeline if the number of proposals is more than expected or if other program priorities take precedence. Investigators will be notified electronically by NIAID about the status of their sequencing projects. A list of organisms selected for sequencing will be posted on the NIAID Microbial Sequencing Center Web site.

Investigators wishing to apply for support to sequence an organism not described above must do so in the context of an investigator-initiated, hypothesis-driven, unsolicited research project application (R01), subject to standard NIH acceptance and peer-review procedures. NIAID will only accept such applications for review that contain a substantial research component beyond genome sequencing.

Post-Selection Process

Once the sequencing project is reviewed and selected, NIAID will select the NIAID MSC to perform the sequencing.

  • The investigator or group of investigators must prepare a detailed plan for sequencing the organism or group of organisms in collaboration and consultation with the NIAID MSC and NIAID. The plan must include a detailed strategy for sequencing and primary annotation and analysis, budget, specific information for acquiring the appropriate reagents, and a timeline with milestones for acquiring the appropriate reagents and determining the sequence and primary annotation.
  • The NIAID MSC will develop a data release and usage plan in consultation with the investigator or group of investigators and NIAID, prior to the actual sequencing, based on the data release and usage plan for pre-publication of microbial genome sequence data developed by the Microbe Project Interagency Working Group.

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Related Links

Broad Institute Microbial Sequencing Center (non-gov't link)

J. Craig Venter Institute Microbial Sequencing Center (non-gov't link)

Highlights

Release of preliminary 0.5 gene annotation of Ixodes scapularis (ABJB010000000) April 29, 2008

PFGRC Announces the Addition of an Influenza Gateway® Entry Clone Set (non-gov't link)

NIAID Media Availability: Study Provides New Understanding of Forces Behind Seasonal Flu Virus Evolution
April 16, 2008

Culex pipiens quinquefasciatus annotation coming soon. Assembly information here

NIH Human Microbiome Project

Influenza Genome Sequencing Project

NIAID Genomics Initiatives (PDF)

See Also

Bioinformatics Resource Centers

Proteomics Research Centers

Pathogen Functional Genomics Resource Center

Structural Genomics

 

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Related Links

Broad Institute Microbial Sequencing Center (non-gov't link)

J. Craig Venter Institute Microbial Sequencing Center (non-gov't link)

Highlights

Release of preliminary 0.5 gene annotation of Ixodes scapularis (ABJB010000000) April 29, 2008

PFGRC Announces the Addition of an Influenza Gateway® Entry Clone Set (non-gov't link)

NIAID Media Availability: Study Provides New Understanding of Forces Behind Seasonal Flu Virus Evolution
April 16, 2008

Culex pipiens quinquefasciatus annotation coming soon. Assembly information here

NIH Human Microbiome Project

Influenza Genome Sequencing Project

NIAID Genomics Initiatives (PDF)

See Also

Bioinformatics Resource Centers

Proteomics Research Centers

Pathogen Functional Genomics Resource Center

Structural Genomics